SNP Profiles of AMAZ 5/2 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
1._AMAZ_5_/2	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
2._AMAZ_5_/2	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
3._AMAZ_5_/2	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
4._GC-03-008-1-08	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
5._GC-03-008-1-08	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
6._GC-03-008-1-08	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
7._GC-03-008-1-08	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	CT	AA
8._RUQ_93	_	_	CC	_	_	_	_	TT	_	CC	_	AG	_	AA
9._RUQ_93	CC	GG	CC	TT	TT	AA	TT	TT	CC	CC	AA	AG	TT	AA
10._RUQ_93	_	GG	CC	TT	_	_	_	TT	_	_	_	_	CT	AA
11._AMAZ_5_/2	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
1._AMAZ_5_/2	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
2._AMAZ_5_/2	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
3._AMAZ_5_/2	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
4._GC-03-008-1-08	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
5._GC-03-008-1-08	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
6._GC-03-008-1-08	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
7._GC-03-008-1-08	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
8._RUQ_93	_	_	_	_	_	CC	GG	AA	_	AA	GG	_	_	CC
9._RUQ_93	CC	AA	GG	CC	CT	CC	GG	AA	CT	AA	GG	GG	CC	CC
10._RUQ_93	_	_	_	_	TT	CC	GG	_	CT	AA	GG	GG	CC	CC
11._AMAZ_5_/2	TT	AA	GG	TT	CC	GG	GG	AA	TT	AA	CC	TT	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
1._AMAZ_5_/2	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
2._AMAZ_5_/2	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
3._AMAZ_5_/2	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
4._GC-03-008-1-08	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
5._GC-03-008-1-08	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
6._GC-03-008-1-08	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
7._GC-03-008-1-08	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
8._RUQ_93	_	_	_	_	AA	_	_	_	_	AA	_	_	X_X	X_X
9._RUQ_93	AA	GG	AA	TT	AA	GG	AA	TT	TT	AA	AA	GG	X_X	X_X
10._RUQ_93	AA	_	AA	TT	AA	GG	AA	TT	TT	AA	_	_	X_X	X_X
11._AMAZ_5_/2	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X

Input profile: AMAZ_5_/2

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Mars Center for Cocoa Science, Brazil

Location: 3108 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._AMAZ_5_/2

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 9 > FP

Dapeng Zhang, 2016

2._AMAZ_5_/2

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 8 > FP

Dapeng Zhang, 2016

3._AMAZ_5_/2

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 5

Dapeng Zhang, 2016

4._AMAZ_5_/2 GC-03-008-1-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

5._AMAZ_5_/2 GC-03-008-1-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

6._AMAZ_5_/2 GC-03-008-1-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

7._AMAZ_5_/2 GC-03-008-1-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

8._AMAZ_5_/2 RUQ_93

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

9._AMAZ_5_/2 RUQ_93

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._AMAZ_5_/2 RUQ_93

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._AMAZ_5_/2

50 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A20 T1

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25